☰ Navigation Tabs
Crystal structure of amicyanin substituted with cobalt
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 5.5 293 3.6 M monobasic sodium phosphate, 0.4 M dibasic potassium phosphate, pH 5.5, EVAPORATION, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.04 39.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.701 α = 90 b = 56.401 β = 99.67 c = 58.706 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 4 2002-08-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.9000 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 57.7 97.8 0.052 15.3 71330 71330
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.45 91.2 0.273 2.2 6596
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 57.7 71330 67713 3598 97.63 0.184 0.184 0.182 0.1832 0.21 0.2097 RANDOM 10.843
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.51 0.42 -0.39 1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.618 r_dihedral_angle_1_deg 5.564 r_scangle_it 3.89 r_scbond_it 2.386 r_angle_refined_deg 1.695 r_mcangle_it 1.57 r_mcbond_it 0.932 r_angle_other_deg 0.768 r_nbd_refined 0.258 r_symmetry_vdw_refined 0.243
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.618 r_dihedral_angle_1_deg 5.564 r_scangle_it 3.89 r_scbond_it 2.386 r_angle_refined_deg 1.695 r_mcangle_it 1.57 r_mcbond_it 0.932 r_angle_other_deg 0.768 r_nbd_refined 0.258 r_symmetry_vdw_refined 0.243 r_symmetry_vdw_other 0.227 r_symmetry_hbond_refined 0.212 r_nbd_other 0.209 r_xyhbond_nbd_other 0.196 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.109 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3240 Nucleic Acid Atoms Solvent Atoms 617 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CCP4 phasing