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4-Chlorobenzoyl-CoA Ligase/Synthetase bound to 4-chlorobenzoate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 277 6-8% PEG 4000;10% glycerol; 0.25 M CaCl2; 50 mM CHES, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.84 56.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.979 α = 90 b = 124.979 β = 90 c = 69.001 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU RAXIS IV 2003-08-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 25.41 96.1 0.066 13.6 2.5 31505 30276 40.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 78.5 0.373 2435
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.206 25.41 28772 1496 95.99 0.18067 0.18067 0.17845 0.1794 0.22313 0.222 RANDOM 29.757
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.48 0.74 1.48 -2.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.733 r_scangle_it 2.523 r_scbond_it 1.543 r_angle_refined_deg 1.203 r_mcangle_it 0.855 r_mcbond_it 0.448 r_symmetry_vdw_refined 0.23 r_nbd_refined 0.194 r_xyhbond_nbd_refined 0.149 r_symmetry_hbond_refined 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.733 r_scangle_it 2.523 r_scbond_it 1.543 r_angle_refined_deg 1.203 r_mcangle_it 0.855 r_mcbond_it 0.448 r_symmetry_vdw_refined 0.23 r_nbd_refined 0.194 r_xyhbond_nbd_refined 0.149 r_symmetry_hbond_refined 0.12 r_metal_ion_refined 0.083 r_chiral_restr 0.079 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3784 Nucleic Acid Atoms Solvent Atoms 325 Heterogen Atoms 11
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SnB phasing PHASES phasing REFMAC refinement