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Formyl-CoA Transferase in complex with Oxalyl-CoA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P5R PDB entry 1P5R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 Mg acetate, PEG 8000, Na cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.57 51.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.163 α = 90 b = 100.163 β = 90 c = 196.872 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESEARCH 2004-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 1.087 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.61 25.48 99.1 0.118 15.6 6.4 30208 30208 63.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.67 100 0.332 4.6 6.7 4046
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1P5R 2.61 20 30208 28694 1514 96.63 0.20369 0.20369 0.20001 0.1978 0.27308 0.272 RANDOM 30.374
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.78 -2.78 5.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.37 r_scangle_it 3.323 r_scbond_it 1.984 r_angle_refined_deg 1.821 r_mcangle_it 1.425 r_angle_other_deg 0.96 r_mcbond_it 0.762 r_nbd_other 0.238 r_nbd_refined 0.221 r_symmetry_vdw_other 0.178
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.37 r_scangle_it 3.323 r_scbond_it 1.984 r_angle_refined_deg 1.821 r_mcangle_it 1.425 r_angle_other_deg 0.96 r_mcbond_it 0.762 r_nbd_other 0.238 r_nbd_refined 0.221 r_symmetry_vdw_other 0.178 r_xyhbond_nbd_refined 0.17 r_symmetry_vdw_refined 0.161 r_chiral_restr 0.104 r_nbtor_other 0.095 r_bond_refined_d 0.021 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6631 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing