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Formyl-CoA Tranferase mutant Asp169 to Ser
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P5R PDB entry 1P5R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 PEG 4000, Hepes, Mg chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.88 56.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.825 α = 90 b = 151.825 β = 90 c = 100.227 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESEARCH 2004-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 1.087 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30.29 99.6 0.061 17 4.3 50343 50343 40.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 99.6 0.337 3.6 4.3 7322
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB entry 1P5R 2.3 20 47706 47706 2538 99.37 0.17893 0.17893 0.17704 0.1836 0.21576 0.2198 RANDOM 40.397
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.15 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.268 r_scangle_it 2.79 r_scbond_it 1.718 r_angle_refined_deg 1.476 r_mcangle_it 1.231 r_angle_other_deg 0.835 r_mcbond_it 0.658 r_symmetry_vdw_other 0.271 r_symmetry_vdw_refined 0.233 r_nbd_other 0.229
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.268 r_scangle_it 2.79 r_scbond_it 1.718 r_angle_refined_deg 1.476 r_mcangle_it 1.231 r_angle_other_deg 0.835 r_mcbond_it 0.658 r_symmetry_vdw_other 0.271 r_symmetry_vdw_refined 0.233 r_nbd_other 0.229 r_symmetry_hbond_refined 0.229 r_nbd_refined 0.198 r_xyhbond_nbd_refined 0.18 r_chiral_restr 0.085 r_nbtor_other 0.085 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_gen_planes_other 0.005 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6622 Nucleic Acid Atoms Solvent Atoms 439 Heterogen Atoms 98
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling