☰ Navigation Tabs
Half-sandwich arene ruthenium(II)-enzyme complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 193L PDB entry 193L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 277 NaCl, Na acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.08 40.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.142 α = 90 b = 80.142 β = 90 c = 37.064 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 0.976 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 56.8 99.9 0.083 2.3 6.9 16497 2.4 2.4 17.639
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.69 100 0.315 2.4 7.1 16705
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 193L 1.6 56.8 2 15623 15623 831 99.88 0.1841 0.1841 0.1823 0.1932 0.21741 0.2278 RANDOM 15.348
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 -0.4 0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.336 r_scangle_it 3.837 r_scbond_it 2.323 r_angle_other_deg 1.507 r_mcangle_it 1.503 r_angle_refined_deg 1.422 r_mcbond_it 0.819 r_symmetry_vdw_other 0.32 r_nbd_refined 0.26 r_nbd_other 0.254
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.336 r_scangle_it 3.837 r_scbond_it 2.323 r_angle_other_deg 1.507 r_mcangle_it 1.503 r_angle_refined_deg 1.422 r_mcbond_it 0.819 r_symmetry_vdw_other 0.32 r_nbd_refined 0.26 r_nbd_other 0.254 r_xyhbond_nbd_refined 0.157 r_symmetry_hbond_refined 0.156 r_chiral_restr 0.089 r_nbtor_other 0.083 r_symmetry_vdw_refined 0.066 r_metal_ion_refined 0.057 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1005 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing