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ROTATION MECHANISM FOR TRANSMEMBRANE SIGNALING BY THE ATRIAL NATRIURETIC PEPTIDE RECEPTOR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DP4 PDB ENTRY 1DP4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 AMMONIUM SULFATE, SODIUM CHLORIDE, pH 6.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 3.21 67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.131 α = 90 b = 100.131 β = 90 c = 259.803 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 2003-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.979338 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.95 87.71 93.7 0.054 30.9 30886 25503 0.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.95 3.04 89.8 0.554 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1DP4 2.95 87.71 1 30886 25503 2123 89.13 0.2399 0.23745 0.23745 0.26857 RANDOM 52.512
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.48 0.24 0.48 -0.72
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 3.549 r_dihedral_angle_1_deg 3.161 r_mcangle_it 2.94 r_scbond_it 2.478 r_mcbond_it 1.559 r_angle_refined_deg 1.55 r_nbd_refined 0.243 r_symmetry_vdw_refined 0.203 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.084
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 3.549 r_dihedral_angle_1_deg 3.161 r_mcangle_it 2.94 r_scbond_it 2.478 r_mcbond_it 1.559 r_angle_refined_deg 1.55 r_nbd_refined 0.243 r_symmetry_vdw_refined 0.203 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.084 r_bond_refined_d 0.009 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6818 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 114
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS refinement DENZO data reduction CNS phasing