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Crystal structure of LUSH from Drosophila melanogaster: apo protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OOF PDB entry 1OOF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 PEG 4000, Sodium Acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.16 36.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.935 α = 90 b = 46.935 β = 90 c = 111.356 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 IMAGE PLATE RIGAKU RAXIS IV OSMIC BLUE OPTICS 2003-10-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 50 96.7 0.057 28.6 4.6 20245 19577
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.86 1.93 99.2 0.282 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1OOF 1.86 15 18185 17358 1898 95.45 0.19349 0.19349 0.18693 0.25542 RANDOM 33.794
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 0.22 -0.45
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.002 r_dihedral_angle_1_deg 4.972 r_scbond_it 3.132 r_mcangle_it 1.883 r_angle_refined_deg 1.559 r_mcbond_it 1.128 r_symmetry_vdw_refined 0.217 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.148 r_symmetry_hbond_refined 0.117
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.002 r_dihedral_angle_1_deg 4.972 r_scbond_it 3.132 r_mcangle_it 1.883 r_angle_refined_deg 1.559 r_mcbond_it 1.128 r_symmetry_vdw_refined 0.217 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.148 r_symmetry_hbond_refined 0.117 r_chiral_restr 0.114 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2021 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing