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Phosphoglucose isomerase from Leishmania mexicana in complex with substrate D-fructose-6-phosphate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 291 10% PEG 6000, pH 9, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.87 56.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.129 α = 90 b = 85.129 β = 90 c = 350.089 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315 2003-04-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.100 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 74.536 100 0.061 7.1 32626 32626 58.58
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.48 100 0.339 0.43 1.8 6 4622
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.35 74.53 30902 30902 1618 99.94 0.22228 0.22228 0.22031 0.2262 0.25983 0.2092 RANDOM 32.895
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.06 0.12 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.226 r_dihedral_angle_4_deg 24.485 r_dihedral_angle_3_deg 19.485 r_dihedral_angle_1_deg 6.837 r_scangle_it 2.947 r_scbond_it 1.798 r_angle_refined_deg 1.692 r_mcangle_it 1.272 r_angle_other_deg 0.968 r_mcbond_it 0.695
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.226 r_dihedral_angle_4_deg 24.485 r_dihedral_angle_3_deg 19.485 r_dihedral_angle_1_deg 6.837 r_scangle_it 2.947 r_scbond_it 1.798 r_angle_refined_deg 1.692 r_mcangle_it 1.272 r_angle_other_deg 0.968 r_mcbond_it 0.695 r_symmetry_vdw_other 0.263 r_nbd_other 0.261 r_nbd_refined 0.239 r_xyhbond_nbd_refined 0.236 r_symmetry_vdw_refined 0.2 r_symmetry_hbond_refined 0.188 r_chiral_restr 0.095 r_nbtor_other 0.092 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4355 Nucleic Acid Atoms Solvent Atoms 180 Heterogen Atoms 16
Software Software Software Name Purpose HKL-2000 data collection SCALA data scaling AMoRE phasing REFMAC refinement HKL-2000 data reduction CCP4 data scaling