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YLR011wp, a Saccharomyces cerevisiae NA(D)PH-dependent FMN reductase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 10% PEG 3000, 30% PEG 400, 0.1M Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.06 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.801 α = 90 b = 109.957 β = 90 c = 49.951 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-10-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.979678 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 35 96.9 0.063 21.9 4.35 27164 2 2 40
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.94 95.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 10 23174 22018 1156 97.26 0.258 0.20175 0.19894 0.229 0.25436 0.2374 RANDOM 40.579
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.14 -1.61 2.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.22 r_mcangle_it 3.288 r_scangle_it 3.194 r_mcbond_it 2.162 r_scbond_it 2.096 r_angle_other_deg 0.932 r_angle_refined_deg 0.743 r_symmetry_vdw_other 0.35 r_symmetry_vdw_refined 0.348 r_nbd_other 0.273
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.22 r_mcangle_it 3.288 r_scangle_it 3.194 r_mcbond_it 2.162 r_scbond_it 2.096 r_angle_other_deg 0.932 r_angle_refined_deg 0.743 r_symmetry_vdw_other 0.35 r_symmetry_vdw_refined 0.348 r_nbd_other 0.273 r_symmetry_hbond_refined 0.239 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.217 r_chiral_restr 0.132 r_nbtor_other 0.101 r_metal_ion_refined 0.078 r_gen_planes_refined 0.012 r_gen_planes_other 0.006 r_bond_refined_d 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2823 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing