☰ Navigation Tabs
Structure of ThuA-like protein from Bacillus stearothermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 273 VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.5 50.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.542 α = 90.84 b = 74.603 β = 97.78 c = 123.518 γ = 118.69
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD CUSTOM-MADE 2003-06-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 1.28136 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 85.4 243014 207543 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Se-SAD THROUGHOUT 1.7 20 207543 206503 1040 85.4 0.14484 0.14467 0.1649 0.17536 0.1813 RANDOM 12.821
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.5 -0.47 0.49 -0.42 0.21 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.131 r_dihedral_angle_4_deg 17.521 r_dihedral_angle_3_deg 14.904 r_dihedral_angle_1_deg 6.625 r_scangle_it 4.435 r_scbond_it 3.199 r_mcangle_it 2.081 r_angle_refined_deg 1.951 r_mcbond_it 1.801 r_angle_other_deg 0.954
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.131 r_dihedral_angle_4_deg 17.521 r_dihedral_angle_3_deg 14.904 r_dihedral_angle_1_deg 6.625 r_scangle_it 4.435 r_scbond_it 3.199 r_mcangle_it 2.081 r_angle_refined_deg 1.951 r_mcbond_it 1.801 r_angle_other_deg 0.954 r_mcbond_other 0.465 r_symmetry_vdw_other 0.253 r_xyhbond_nbd_refined 0.245 r_symmetry_vdw_refined 0.245 r_nbd_refined 0.231 r_xyhbond_nbd_other 0.217 r_nbd_other 0.213 r_symmetry_hbond_refined 0.195 r_metal_ion_refined 0.181 r_chiral_restr 0.132 r_nbtor_other 0.09 r_bond_refined_d 0.024 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15711 Nucleic Acid Atoms Solvent Atoms 1624 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SnB phasing