☰ Navigation Tabs
The structure of thioredoxin from S. coelicolor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 295 Ammonium acetate, sodium citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.2 42.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.579 α = 90 b = 71.756 β = 90 c = 33.187 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2004-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97918 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.51 25 16654
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.51 25 15784 843 96.44 0.17595 0.17394 0.1853 0.21486 0.2246 RANDOM 16.743
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.97 0.93 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.855 r_scangle_it 5.596 r_scbond_it 3.817 r_mcangle_it 2.734 r_mcbond_it 1.777 r_angle_refined_deg 1.469 r_angle_other_deg 0.76 r_nbd_refined 0.487 r_symmetry_vdw_other 0.431 r_xyhbond_nbd_refined 0.334
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.855 r_scangle_it 5.596 r_scbond_it 3.817 r_mcangle_it 2.734 r_mcbond_it 1.777 r_angle_refined_deg 1.469 r_angle_other_deg 0.76 r_nbd_refined 0.487 r_symmetry_vdw_other 0.431 r_xyhbond_nbd_refined 0.334 r_symmetry_vdw_refined 0.329 r_nbd_other 0.292 r_symmetry_hbond_refined 0.27 r_chiral_restr 0.099 r_nbtor_other 0.089 r_gen_planes_refined 0.015 r_bond_refined_d 0.014 r_gen_planes_other 0.008 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 847 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing