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L230A mutant flavocytochrome b2 with benzoylformate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FCB pdb id 1FCB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 291 0.1 M citrate, 0.2 M NaBr, 12-15% PEG3350, 18-20% glycerol, 50 mM benzoylformate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.8 67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 163.027 α = 90 b = 163.027 β = 90 c = 112.473 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 0.9750 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 24 90.5 0.072 7.86 34884 31503 48.392
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 90.4 0.326 1.69 3101
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb id 1FCB 3 24 34884 29925 1577 90.6 0.20266 0.20024 0.2065 0.24918 0.2512 RANDOM 48.392
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.9 0.95 1.9 -2.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.368 r_scangle_it 2.831 r_angle_refined_deg 1.825 r_scbond_it 1.565 r_mcangle_it 1.417 r_angle_other_deg 1.043 r_mcbond_it 0.748 r_symmetry_vdw_other 0.252 r_nbd_other 0.239 r_nbd_refined 0.228
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.368 r_scangle_it 2.831 r_angle_refined_deg 1.825 r_scbond_it 1.565 r_mcangle_it 1.417 r_angle_other_deg 1.043 r_mcbond_it 0.748 r_symmetry_vdw_other 0.252 r_nbd_other 0.239 r_nbd_refined 0.228 r_xyhbond_nbd_refined 0.197 r_symmetry_vdw_refined 0.162 r_symmetry_hbond_refined 0.162 r_chiral_restr 0.114 r_nbtor_other 0.094 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6083 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 84
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement