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Triosephosphate isomerase from Gallus gallus, loop 6 mutant K174N, T175S, A176S
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SW3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 295 2.6M ammonium sulfate, 0.1M Na-citrate, 0.2M NaCl, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.91 57.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.218 α = 90 b = 87.218 β = 90 c = 162.942 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 IMAGE PLATE MARRESEARCH mirrors M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.22 20 100 31858 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.22 2.3 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1sw3 2.22 20 30185 1603 99.99 0.1971 0.19503 0.193 0.23589 0.2315 RANDOM 12.972
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 -0.42 0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.319 r_scangle_it 2.518 r_scbond_it 1.528 r_angle_refined_deg 1.309 r_mcangle_it 0.828 r_angle_other_deg 0.814 r_symmetry_hbond_refined 0.499 r_mcbond_it 0.437 r_symmetry_vdw_refined 0.387 r_symmetry_vdw_other 0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.319 r_scangle_it 2.518 r_scbond_it 1.528 r_angle_refined_deg 1.309 r_mcangle_it 0.828 r_angle_other_deg 0.814 r_symmetry_hbond_refined 0.499 r_mcbond_it 0.437 r_symmetry_vdw_refined 0.387 r_symmetry_vdw_other 0.35 r_nbd_other 0.246 r_nbd_refined 0.21 r_xyhbond_nbd_refined 0.193 r_nbtor_other 0.084 r_chiral_restr 0.072 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3708 Nucleic Acid Atoms Solvent Atoms 287 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement DENZO data reduction CCP4 data scaling AMoRE phasing