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Triosephosphate isomerase from Gallus gallus, loop 6 mutant T175V
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SW0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 25% PEG 6000, 0.2M Li2SO4, 0.1M ADA, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.71 54.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.443 α = 90 b = 73.85 β = 90 c = 136.426 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 IMAGE PLATE MARRESEARCH mirrors 1999-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 40 93.6 37515 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1SW0 2.03 25 35610 1888 97.28 0.14454 0.14287 0.17526 0.2022 RANDOM 17.795
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.48 -0.96 -1.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.651 r_scangle_it 4.722 r_scbond_it 2.736 r_mcangle_it 1.769 r_angle_refined_deg 1.369 r_mcbond_it 0.9 r_angle_other_deg 0.823 r_symmetry_vdw_other 0.283 r_nbd_other 0.249 r_nbd_refined 0.207
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.651 r_scangle_it 4.722 r_scbond_it 2.736 r_mcangle_it 1.769 r_angle_refined_deg 1.369 r_mcbond_it 0.9 r_angle_other_deg 0.823 r_symmetry_vdw_other 0.283 r_nbd_other 0.249 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.16 r_xyhbond_nbd_refined 0.158 r_symmetry_hbond_refined 0.099 r_nbtor_other 0.084 r_chiral_restr 0.083 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3732 Nucleic Acid Atoms Solvent Atoms 324 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement DENZO data reduction CCP4 data scaling AMoRE phasing