☰ Navigation Tabs
Initial Stuctural Analysis of Leishmania major Threonine Aldolase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 293 PEG8000, HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.9 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.094 α = 90 b = 119.094 β = 90 c = 129.597 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-02-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.9794, 0.9494, 0.9797 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 19.58 100 54773
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 19.17 51945 51943 2778 99.85 0.19927 0.19767 0.2075 0.22968 0.2351 RANDOM 40.534
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.83 r_dihedral_angle_1_deg 5.613 r_scbond_it 4.498 r_mcangle_it 3.196 r_mcbond_it 1.962 r_angle_refined_deg 1.266 r_angle_other_deg 0.781 r_symmetry_vdw_other 0.27 r_nbd_other 0.227 r_symmetry_vdw_refined 0.212
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.83 r_dihedral_angle_1_deg 5.613 r_scbond_it 4.498 r_mcangle_it 3.196 r_mcbond_it 1.962 r_angle_refined_deg 1.266 r_angle_other_deg 0.781 r_symmetry_vdw_other 0.27 r_nbd_other 0.227 r_symmetry_vdw_refined 0.212 r_nbd_refined 0.201 r_metal_ion_refined 0.147 r_xyhbond_nbd_refined 0.117 r_symmetry_hbond_refined 0.092 r_nbtor_other 0.083 r_chiral_restr 0.076 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_gen_planes_other 0.005 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5186 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHARP phasing