☰ Navigation Tabs
Crystal structure of a hypothetical protein at 2.2 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 50 mM Sodium Acetate, 2.0 M Sodium Formate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.61 52.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.295 α = 90 b = 115.295 β = 90 c = 185.148 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-02-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.9798 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 72907 66929
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 91.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 20 60607 55577 2983 91.7 0.21709 0.21494 0.2156 0.25753 0.2516 RANDOM 21.613
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 -0.25 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.957 r_scangle_it 2.973 r_scbond_it 1.706 r_angle_refined_deg 1.234 r_mcangle_it 1.18 r_angle_other_deg 0.779 r_mcbond_it 0.612 r_xyhbond_nbd_refined 0.235 r_symmetry_vdw_other 0.232 r_nbd_other 0.222
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.957 r_scangle_it 2.973 r_scbond_it 1.706 r_angle_refined_deg 1.234 r_mcangle_it 1.18 r_angle_other_deg 0.779 r_mcbond_it 0.612 r_xyhbond_nbd_refined 0.235 r_symmetry_vdw_other 0.232 r_nbd_other 0.222 r_nbd_refined 0.204 r_symmetry_hbond_refined 0.198 r_symmetry_vdw_refined 0.158 r_nbtor_other 0.084 r_chiral_restr 0.073 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7716 Nucleic Acid Atoms Solvent Atoms 450 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHENIX phasing