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Solution structure of Ole e 6, an allergen from olive tree pollen
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D NOESY
0.6 mM ole e 6; 95% H2O, 5% D2O
95% H2O/5% D2O
null
6.0
ambient
308
2
2D TOCSY
0.6 mM ole e 6; 95% H2O, 5% D2O
95% H2O/5% D2O
null
6.0
ambient
308
3
DQF-COSY
0.6 mM ole e 6; 95% H2O, 5% D2O
95% H2O/5% D2O
null
6.0
ambient
308
4
2D NOESY
0.6 mM ole e 6; 100% D2O
100% D2O
null
6.0
ambient
308
5
2D TOCSY
0.6 mM ole e 6; 100% D2O
100% D2O
null
6.0
ambient
308
6
3D_15N-separated_NOESY
1mM ole e 6 U-15N; 95% H2O, 5% D2O
95% H2O/5% D2O
null
6.0
ambient
308
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE
600
NMR Refinement
Method
Details
Software
simulated annealing, torsion angle dynamics
the structures are based on a total of 1428 unambigous NOEs, which leads to 900 upper limit distances.
486 relevant distance restraints, and 24 angle constraints were used. The best conformers were energy-minimized with AMBER7
XwinNMR
NMR Ensemble Information
Conformer Selection Criteria
structures with the lowest energy
Conformers Calculated Total Number
100
Conformers Submitted Total Number
25
Representative Model
1 (lowest energy)
Additional NMR Experimental Information
Details
These structures were determined using standard 2D-NOE homonuclear techniques and 3D-NOE heteronuclear techniques