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Crystal Structure of the Rap1GAP catalytic domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 277 PEG 3350, MPD, magnesium sulfate, HEPES, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4 69.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 170.7 α = 90 b = 224.5 β = 90 c = 48.7 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2003-04-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 20 98.9 0.053 0.06 17.2 4.9 42290 -3 71
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 2.972 99.8 0.336 0.345 3.86 4.8 4032
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.9 14.99 40001 40001 2103 99.44 0.234 0.234 0.23179 0.2278 0.276 0.27 RANDOM 23.265
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.69 4.37 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4 r_scangle_it 1.921 r_angle_refined_deg 1.813 r_scbond_it 1.212 r_mcangle_it 0.688 r_symmetry_vdw_refined 0.386 r_mcbond_it 0.375 r_nbd_refined 0.247 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.136
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4 r_scangle_it 1.921 r_angle_refined_deg 1.813 r_scbond_it 1.212 r_mcangle_it 0.688 r_symmetry_vdw_refined 0.386 r_mcbond_it 0.375 r_nbd_refined 0.247 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.136 r_symmetry_hbond_refined 0.122 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8168 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 26
Software Software Software Name Purpose XDS data scaling XDS data reduction SHARP phasing REFMAC refinement