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Progesterone Receptor Hormone Binding Domain with Bound Mometasone Furoate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A28 PDB ENTRY 1A28
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 300 PEG 1000, Li2SO4, hepes, glycerol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.18 43.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.112 α = 90 b = 64.256 β = 96.88 c = 70.091 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 mirrors 2002-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 20 98.5 0.05 19.7 3 2.5 -5 16
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.46 98.9 0.22 3.5 3 8772
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1A28 1.46 19.96 -5 74273 74273 5656 100 0.1762 0.17359 0.1799 0.21061 0.1737 RANDOM 20.593
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.21 0.44 -0.21 -0.9
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.391 r_dihedral_angle_1_deg 5.65 r_scbond_it 4.351 r_angle_refined_deg 3.101 r_mcangle_it 2.922 r_mcbond_it 1.754 r_symmetry_vdw_refined 0.67 r_symmetry_hbond_refined 0.542 r_chiral_restr 0.283 r_nbd_refined 0.235
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.391 r_dihedral_angle_1_deg 5.65 r_scbond_it 4.351 r_angle_refined_deg 3.101 r_mcangle_it 2.922 r_mcbond_it 1.754 r_symmetry_vdw_refined 0.67 r_symmetry_hbond_refined 0.542 r_chiral_restr 0.283 r_nbd_refined 0.235 r_xyhbond_nbd_refined 0.158 r_bond_refined_d 0.043 r_gen_planes_refined 0.017
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4002 Nucleic Acid Atoms Solvent Atoms 286 Heterogen Atoms 81
Software Software Software Name Purpose REFMAC refinement ADSC data collection SCALEPACK data scaling AMoRE phasing