☰ Navigation Tabs
The crystal structure of the E. coli Fmu apoenzyme at 1.65 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.4 293 PEG4000, Tris-HCl, pH 8.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.47 50.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.672 α = 90 b = 48.695 β = 108.65 c = 86.802 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.921 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 31.4 98.66 0.045 23.6 5.3 56917 56794 2 2 18
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 30 53354 2799 98.68 0.22461 0.2229 0.25721 RANDOM 10.991
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 1.26 -1.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.859 r_dihedral_angle_1_deg 3.611 r_scangle_it 2.815 r_scbond_it 1.815 r_angle_refined_deg 1.316 r_mcangle_it 0.962 r_mcbond_it 0.522 r_nbd_refined 0.249 r_symmetry_vdw_refined 0.188 r_xyhbond_nbd_refined 0.164
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.859 r_dihedral_angle_1_deg 3.611 r_scangle_it 2.815 r_scbond_it 1.815 r_angle_refined_deg 1.316 r_mcangle_it 0.962 r_mcbond_it 0.522 r_nbd_refined 0.249 r_symmetry_vdw_refined 0.188 r_xyhbond_nbd_refined 0.164 r_symmetry_hbond_refined 0.102 r_chiral_restr 0.1 r_bond_refined_d 0.009 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3288 Nucleic Acid Atoms Solvent Atoms 390 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing