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Crystal Structure Analysis of Bovine Bc1 with Azoxystrobin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QCR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.2 277 20mM ammonium acetate, 20% glycerol, 12% PEG4000, 0.5M KCl, 0.1% diheptanoyl-phosphatidylcholine, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 277K, pH 7.20
Crystal Properties Matthews coefficient Solvent content 4 68.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.554 α = 90 b = 153.554 β = 90 c = 596.393 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 MIRRORS 2002-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-D APS 14-BM-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.69 40 99537 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.69 2.72 86.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1QCR 2.69 40 91856 2866 95.6 0.242 0.241 0.288 RANDOM 14.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.75 1.75 -3.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.169 r_scangle_it 2.632 r_angle_refined_deg 1.627 r_scbond_it 1.576 r_mcangle_it 1.014 r_mcbond_it 0.539 r_nbd_refined 0.143 r_symmetry_hbond_refined 0.142 r_chiral_restr 0.12 r_symmetry_vdw_refined 0.118
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.169 r_scangle_it 2.632 r_angle_refined_deg 1.627 r_scbond_it 1.576 r_mcangle_it 1.014 r_mcbond_it 0.539 r_nbd_refined 0.143 r_symmetry_hbond_refined 0.142 r_chiral_restr 0.12 r_symmetry_vdw_refined 0.118 r_xyhbond_nbd_refined 0.104 r_bond_refined_d 0.018 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16500 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 163
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing