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Plasmodium falciparum homolog of Uridine phosphorylase/Purine nucleoside phosphorylase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 PEG3350, ammonium sulfate, MOPS, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.1 41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.087 α = 90 b = 95.087 β = 90 c = 134.786 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Double crystal Si(111) 50 micron collimator 2003-12-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.9795 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 28.26 69.6 0.136 16 8025 8025 17
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.33 22 0.418 2.1 215
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 28.26 7135 7135 354 79.64 0.18403 0.18403 0.18021 0.1816 0.26501 0.262 RANDOM 32.356
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.05 -0.1 0.14
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.106 r_dihedral_angle_1_deg 5.931 r_scbond_it 4.156 r_mcangle_it 3.286 r_mcbond_it 1.855 r_angle_refined_deg 1.269 r_nbd_refined 0.199 r_symmetry_vdw_refined 0.189 r_symmetry_hbond_refined 0.165 r_xyhbond_nbd_refined 0.153
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.106 r_dihedral_angle_1_deg 5.931 r_scbond_it 4.156 r_mcangle_it 3.286 r_mcbond_it 1.855 r_angle_refined_deg 1.269 r_nbd_refined 0.199 r_symmetry_vdw_refined 0.189 r_symmetry_hbond_refined 0.165 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1709 Nucleic Acid Atoms Solvent Atoms 48 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHARP phasing