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STRUCTURE OF OXIDOREDUCTASE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OAC PDB ENTRY 1OAC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.2 1.4M SODIUM CITRATE, 0.1M HEPES BUFFER, PH 7.2 PROTEIN SOLUTION CONCENTRATION 6.5 MG/ML INHIBITOR SOAKING SOLUTION 0.375MM 2-HYDRAZINOPYRIDINE MADE UP IN 1.4M SODIUM CITRATE, 0.1M HEPES BUFFER, PH 7.2. CRYSTAL SOAKED FOR 30 DAYS. CRYOPROTECTANT 20% GLYCEROL, 1.44M SODIUM CITRATE BUFFER, PH 6.4
Crystal Properties Matthews coefficient Solvent content 2.73 54.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 134.46 α = 90 b = 166.07 β = 90 c = 79.41 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 1996-03-15 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 83.7 0.057 8.7 2.6 100550 24.21
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.05 72.9 0.22 3.3 2
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION LEAST SQUARES REFINEMENT PDB ENTRY 1OAC 2 20 100550 83.7 0.206 27.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 24.102 p_staggered_tor 17.671 p_scangle_it 10.129 p_scbond_it 7.582 p_mcangle_it 6.625 p_mcbond_it 5.137 p_planar_tor 2.37 p_multtor_nbd 0.213 p_xyhbond_nbd 0.194 p_singtor_nbd 0.185
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 24.102 p_staggered_tor 17.671 p_scangle_it 10.129 p_scbond_it 7.582 p_mcangle_it 6.625 p_mcbond_it 5.137 p_planar_tor 2.37 p_multtor_nbd 0.213 p_xyhbond_nbd 0.194 p_singtor_nbd 0.185 p_chiral_restr 0.11 p_planar_d 0.048 p_angle_d 0.035 p_hb_or_metal_coord 0.03 p_bond_d 0.01 p_plane_restr 0.01 p_angle_deg p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11319 Nucleic Acid Atoms Solvent Atoms 1064 Heterogen Atoms 48
Software Software Software Name Purpose CCP4 model building PROLSQ refinement MOSFLM data reduction CCP4 data scaling CCP4 phasing