1SOY
Solution structure of the bacterial frataxin orthologue, CyaY
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 0.5mM CyaY 15N, 50mM Phosphate buffer, 150mM KCl, 1mM DTT, 0.05%NaN3 | 90% H2O/10% D2O | 150mM KCl | 7.0 | ambient | 298 | |
2 | 3D_13C-separated_NOESY | 0.5mM CyaY U-15N,13C, 50mM Phosphate buffer, 150mM KCl, 1mM DTT, 0.05%NaN3 | 90% H2O/10% D2O | 150mM KCl | 7.0 | ambient | 298 | |
3 | HNHA | 0.5mM CyaY 15N, 50mM Phosphate buffer, 150mM KCl, 1mM DTT, 0.05%NaN3 | 90% H2O/10% D2O | 150mM KCl | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITY | 500 |
2 | Varian | UNITYPLUS | 600 |
3 | Varian | INOVA | 600 |
4 | Varian | INOVA | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, molecular dynamics | Structures are based on a total of 902 NOE distance restraints, 138 dihedral angle restraints and 46 hydrogen bond restraints | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations, structures with the lowest energy |
Conformers Calculated Total Number | 250 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 1.0.6 | Guntert |
2 | refinement | X-PLOR | 2.8.1 | Brunger |
3 | processing | NMRPipe | 3/2002 | Delaglio |
4 | data analysis | XEASY | 1.2 | Bartels |
5 | data analysis | Sparky | 3 | Goddard T.D. |
6 | data analysis | MOLMOL | 2K.1 | Koradi |