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Crystal structure of the transthyretin mutant A108Y/L110E solved in space group p21212
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 291 Tris, peg550mme, ammonium sulfate, sodium citrate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K, pH 6.00
Crystal Properties Matthews coefficient Solvent content 2.12 42.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.094 α = 90 b = 85.076 β = 90 c = 64.348 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAC Science DIP-2030 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20 95.5 0.047 29.1 9 32271
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 92 0.322 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.6 20 30512 30512 1543 95.54 0.225 0.224 0.2387 0.242 RANDOM 15.19
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.211 r_dihedral_angle_1_deg 3.487 r_scangle_it 2.422 r_scbond_it 1.428 r_angle_refined_deg 1.101 r_mcangle_it 1.065 r_angle_other_deg 0.681 r_mcbond_it 0.546 r_symmetry_vdw_other 0.214 r_nbd_other 0.204
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.211 r_dihedral_angle_1_deg 3.487 r_scangle_it 2.422 r_scbond_it 1.428 r_angle_refined_deg 1.101 r_mcangle_it 1.065 r_angle_other_deg 0.681 r_mcbond_it 0.546 r_symmetry_vdw_other 0.214 r_nbd_other 0.204 r_nbd_refined 0.181 r_symmetry_vdw_refined 0.163 r_symmetry_hbond_refined 0.163 r_xyhbond_nbd_refined 0.092 r_chiral_restr 0.067 r_bond_refined_d 0.006 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_gen_planes_refined r_gen_planes_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1801 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS refinement DENZO data reduction CNS phasing