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Nitric oxide bound to Cu nitrite reductase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 291 PEG4000, sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 291K, pH 4.0
Crystal Properties Matthews coefficient Solvent content 2.08 40.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.726 α = 90 b = 102.595 β = 90 c = 145.652 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2003-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.08 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 25 90.2 0.044 15.9 7.6 15.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.36 82.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.31 34.3 191015 10037 90.35 0.12469 0.1238 0.14136 RANDOM 13.148
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 -0.1
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 9.856 r_dihedral_angle_1_deg 7.261 r_sphericity_bonded 3.822 r_scangle_it 3.685 r_scbond_it 2.464 r_mcangle_it 1.662 r_angle_refined_deg 1.418 r_mcbond_it 1.091 r_rigid_bond_restr 0.841 r_angle_other_deg 0.785
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 9.856 r_dihedral_angle_1_deg 7.261 r_sphericity_bonded 3.822 r_scangle_it 3.685 r_scbond_it 2.464 r_mcangle_it 1.662 r_angle_refined_deg 1.418 r_mcbond_it 1.091 r_rigid_bond_restr 0.841 r_angle_other_deg 0.785 r_symmetry_vdw_other 0.282 r_nbd_other 0.251 r_symmetry_vdw_refined 0.221 r_nbd_refined 0.203 r_xyhbond_nbd_refined 0.128 r_symmetry_hbond_refined 0.126 r_chiral_restr 0.088 r_nbtor_other 0.081 r_gen_planes_other 0.014 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7687 Nucleic Acid Atoms Solvent Atoms 1099 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling