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KUMAMOLISIN-AS, APOENZYME
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GT9 pdb entry 1GT9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 298 PEG8000, Ammounium Sulfate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.46 15.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.81 α = 113.9 b = 44.95 β = 106.1 c = 49.11 γ = 102.3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 90 0.035 25.8 1.6 17755
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 61.6 0.125 6.7 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R pdb entry 1GT9 2 10 16732 886 85.5 0.1505 0.1492 0.1485 0.255 0.2358 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 2811.5
RMS Deviations Key Refinement Restraint Deviation s_similar_adp_cmpnt 0.081 s_non_zero_chiral_vol 0.034 s_angle_d 0.033 s_zero_chiral_vol 0.027 s_from_restr_planes 0.0236 s_anti_bump_dis_restr 0.011 s_bond_d 0.01 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2526 Nucleic Acid Atoms Solvent Atoms 286 Heterogen Atoms 1
Software Software Software Name Purpose SCALEPACK data scaling AMoRE phasing SHELXL-97 refinement