☰ Navigation Tabs
AGAO in covalent complex with the inhibitor NOBA ("4-(2-naphthyloxy)-2-butyn-1-amine")
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 4 microlitres of (AGAO 10 mg/ml, 50mM HEPES pH 7.0, 5-fold molar excess of NOBA, incubated at RT for four hours) plus 4 microlitres of the reservoir solution (1.5M (NH4)2SO4, 260micromolar CuSO4, 100mM MES pH 6.5). Crystals cryoprotected by gradual, successive transfers over 2 hours, finally to a solution of 1.5M (NH4)2SO4, 100mM MES pH 6.5, 2.5mM EGTA, 30% glycerol., VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.05 59.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 158.06 α = 90 b = 62.619 β = 112.11 c = 91.99 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2003-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.08 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 19.88 0.034 13 10 85823 85823 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 76.4 0.31 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 19.88 85822 81489 4333 93.37 0.15858 0.15727 0.1594 0.18275 0.1845 RANDOM 22.482
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.88 0.22 2.11 -1.06
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.471 r_dihedral_angle_1_deg 6.366 r_scbond_it 6.34 r_mcangle_it 4.459 r_mcbond_it 3.14 r_angle_refined_deg 1.345 r_angle_other_deg 0.796 r_symmetry_vdw_other 0.306 r_nbd_other 0.25 r_nbd_refined 0.194
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.471 r_dihedral_angle_1_deg 6.366 r_scbond_it 6.34 r_mcangle_it 4.459 r_mcbond_it 3.14 r_angle_refined_deg 1.345 r_angle_other_deg 0.796 r_symmetry_vdw_other 0.306 r_nbd_other 0.25 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.161 r_symmetry_hbond_refined 0.142 r_xyhbond_nbd_refined 0.131 r_chiral_restr 0.082 r_nbtor_other 0.082 r_metal_ion_refined 0.018 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4884 Nucleic Acid Atoms Solvent Atoms 495 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement MAR345 data collection DENZO data reduction SCALEPACK data scaling CCP4 data scaling