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AGAO in covalent complex with the inhibitor MOBA ("4-(4-methylphenoxy)-2-butyn-1-amine")
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 2 microlitres of (AGAO 10 mg/ml, 50mM HEPES pH 7.0) plus 2 microlitres of the reservoir solution (1.1M (NH4)2SO4, 150mM Na-citrate pH 6.5) Crystals were cryoprotected and soaked with MOBA. Crystals were soaked in well solution plus 20% glycerol plus 10-fold excess of MOBA., for 48 hours. The glycerol concentration was then raised to 30% over 30 minutes, prior to flash freezing., VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.05 59.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 157.645 α = 90 b = 62.787 β = 112.18 c = 91.657 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate Osmic mirrors 2003-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 22.81 92.3 0.031 29 5.5 80205 80205 -3 21.196
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.77 71.2 0.2 7.4 4943
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.73 22.81 80204 80204 4013 92.44 0.14963 0.14963 0.14864 0.16837 0.2155 RANDOM 23.169
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.77 0.33 1.61 -0.59
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.169 r_dihedral_angle_1_deg 6.212 r_scbond_it 6.127 r_mcangle_it 4.259 r_mcbond_it 2.964 r_angle_refined_deg 1.367 r_angle_other_deg 0.785 r_symmetry_vdw_other 0.313 r_nbd_other 0.253 r_nbd_refined 0.197
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.169 r_dihedral_angle_1_deg 6.212 r_scbond_it 6.127 r_mcangle_it 4.259 r_mcbond_it 2.964 r_angle_refined_deg 1.367 r_angle_other_deg 0.785 r_symmetry_vdw_other 0.313 r_nbd_other 0.253 r_nbd_refined 0.197 r_symmetry_hbond_refined 0.149 r_symmetry_vdw_refined 0.138 r_xyhbond_nbd_refined 0.123 r_nbtor_other 0.083 r_chiral_restr 0.082 r_metal_ion_refined 0.047 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4881 Nucleic Acid Atoms Solvent Atoms 454 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement MAR345 data collection MOSFLM data reduction CCP4 data scaling TRUNCATE data scaling