☰ Navigation Tabs
Crystal structure of a multiple hydrophobic core mutant of ubiquitin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UBQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 288 31% Peg 4K, 0.05M citrate pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 288.0K
Crystal Properties Matthews coefficient Solvent content 2.78 55.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.806 α = 90 b = 49.022 β = 90 c = 75.856 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV mirrors 2002-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.18 41.2 99.8 0.052 10.8 4.8 4810 4796 28.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.18 2.3 99.4 0.182 4.6 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1UBQ 2.18 14 4557 217 99.83 0.19586 0.19586 0.19333 0.1956 0.24848 0.2465 RANDOM 26.918
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.81 -0.63 3.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.671 r_scangle_it 5.71 r_scbond_it 3.448 r_mcangle_it 2.33 r_angle_refined_deg 2.093 r_mcbond_it 1.355 r_nbd_refined 0.252 r_symmetry_hbond_refined 0.208 r_symmetry_vdw_refined 0.206 r_xyhbond_nbd_refined 0.205
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.671 r_scangle_it 5.71 r_scbond_it 3.448 r_mcangle_it 2.33 r_angle_refined_deg 2.093 r_mcbond_it 1.355 r_nbd_refined 0.252 r_symmetry_hbond_refined 0.208 r_symmetry_vdw_refined 0.206 r_xyhbond_nbd_refined 0.205 r_chiral_restr 0.136 r_bond_refined_d 0.023 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 556 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing