☰ Navigation Tabs
Crystal Structure of the von Willebrand factor A domain of human capillary morphogenesis protein 2: an anthrax toxin receptor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 PEG8K, magnesium acetate, sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.2 43.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.691 α = 90 b = 79.691 β = 90 c = 79.691 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-09-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F1 0.9186, 1.0723, 1.0332, 1.0720 CHESS F1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.9 0.065 34.3 9.2 15750 15750 20.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 100 0.426 4.6 1539
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.81 50 14955 14955 773 99.75 0.15149 0.15149 0.14955 0.1618 0.18636 0.1921 RANDOM 18.846
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.177 r_scangle_it 5.392 r_scbond_it 3.192 r_mcangle_it 2.076 r_angle_refined_deg 1.626 r_mcbond_it 1.143 r_angle_other_deg 0.878 r_symmetry_vdw_other 0.325 r_symmetry_vdw_refined 0.276 r_nbd_other 0.249
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.177 r_scangle_it 5.392 r_scbond_it 3.192 r_mcangle_it 2.076 r_angle_refined_deg 1.626 r_mcbond_it 1.143 r_angle_other_deg 0.878 r_symmetry_vdw_other 0.325 r_symmetry_vdw_refined 0.276 r_nbd_other 0.249 r_symmetry_hbond_refined 0.224 r_nbd_refined 0.22 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.103 r_nbtor_other 0.083 r_bond_refined_d 0.018 r_gen_planes_other 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1367 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing