☰ Navigation Tabs
Crystal structure of shrimp alkaline phosphatase with phosphate bound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 42% (w/v) saturated ammonium sulfate, 100mM tris-maleic acid pH 5.6, 1 mM MgCl2, 0.1mM ZnCl2, 5% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.9 57.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 170.676 α = 90 b = 170.677 β = 90 c = 83.925 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 4 2002-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 40 66456
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 39.64 66456 61853 3289 96.26 0.186 0.18758 0.18596 0.1974 0.2182 0.2253 RANDOM 27.674
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.15 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.37 r_dihedral_angle_1_deg 4.859 r_scangle_it 4.343 r_scbond_it 2.772 r_angle_refined_deg 1.969 r_mcangle_it 1.648 r_angle_other_deg 1.153 r_mcbond_it 0.927 r_nbtor_other 0.375 r_symmetry_vdw_refined 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.37 r_dihedral_angle_1_deg 4.859 r_scangle_it 4.343 r_scbond_it 2.772 r_angle_refined_deg 1.969 r_mcangle_it 1.648 r_angle_other_deg 1.153 r_mcbond_it 0.927 r_nbtor_other 0.375 r_symmetry_vdw_refined 0.32 r_symmetry_hbond_refined 0.305 r_nbd_refined 0.244 r_nbd_other 0.219 r_symmetry_vdw_other 0.215 r_metal_ion_refined 0.213 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.114 r_xyhbond_nbd_other 0.041 r_bond_refined_d 0.024 r_gen_planes_refined 0.009 r_gen_planes_other 0.008 r_bond_other_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7462 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MLPHARE phasing