1SH6

Crystal structure of actin-binding domain of mouse plectin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5293PEG 8000, cacodylate, calcium acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2244.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 32.517α = 90
b = 51.226β = 90
c = 144.717γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHmirrors2003-10-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X110.8120EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
125097.60.03833.95.1171141711433.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
22.0286.30.313.53.2498

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT250171141588984897.80.2020.202380.197550.29956RANDOM35.572
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.620.88-0.27
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free17.96
r_dihedral_angle_1_deg8.705
r_scangle_it7.264
r_sphericity_bonded6.458
r_scbond_it5.268
r_mcangle_it3.573
r_rigid_bond_restr2.775
r_angle_refined_deg2.594
r_mcbond_it2.385
r_angle_other_deg1.276
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free17.96
r_dihedral_angle_1_deg8.705
r_scangle_it7.264
r_sphericity_bonded6.458
r_scbond_it5.268
r_mcangle_it3.573
r_rigid_bond_restr2.775
r_angle_refined_deg2.594
r_mcbond_it2.385
r_angle_other_deg1.276
r_symmetry_vdw_other0.297
r_nbd_other0.267
r_nbd_refined0.25
r_xyhbond_nbd_refined0.221
r_symmetry_vdw_refined0.215
r_chiral_restr0.21
r_symmetry_hbond_refined0.138
r_nbtor_other0.114
r_bond_refined_d0.037
r_gen_planes_other0.021
r_gen_planes_refined0.016
r_bond_other_d0.003
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_mcbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3774
Nucleic Acid Atoms
Solvent Atoms174
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement