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Crystal structure of actin-binding domain of mouse plectin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 PEG 8000, cacodylate, calcium acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.22 44.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.517 α = 90 b = 51.226 β = 90 c = 144.717 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH mirrors 2003-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.8120 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 97.6 0.038 33.9 5.1 17114 17114 33.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.02 86.3 0.31 3.5 3.2 498
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 50 17114 15889 848 97.8 0.202 0.20238 0.19755 0.29956 RANDOM 35.572
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 0.88 -0.27
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 17.96 r_dihedral_angle_1_deg 8.705 r_scangle_it 7.264 r_sphericity_bonded 6.458 r_scbond_it 5.268 r_mcangle_it 3.573 r_rigid_bond_restr 2.775 r_angle_refined_deg 2.594 r_mcbond_it 2.385 r_angle_other_deg 1.276
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 17.96 r_dihedral_angle_1_deg 8.705 r_scangle_it 7.264 r_sphericity_bonded 6.458 r_scbond_it 5.268 r_mcangle_it 3.573 r_rigid_bond_restr 2.775 r_angle_refined_deg 2.594 r_mcbond_it 2.385 r_angle_other_deg 1.276 r_symmetry_vdw_other 0.297 r_nbd_other 0.267 r_nbd_refined 0.25 r_xyhbond_nbd_refined 0.221 r_symmetry_vdw_refined 0.215 r_chiral_restr 0.21 r_symmetry_hbond_refined 0.138 r_nbtor_other 0.114 r_bond_refined_d 0.037 r_gen_planes_other 0.021 r_gen_planes_refined 0.016 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3774 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement