☰ Navigation Tabs
Crystal structure of actin-binding domain of mouse plectin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QAG PDB ENTRY 1QAG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 PEG 8000, Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.08 59.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.31 α = 90 b = 108.92 β = 115.25 c = 63.75 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MARRESEARCH mirrors 2000-09-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 1.100 EMBL/DESY, HAMBURG X31
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 30 96.2 0.06 22.2 3.5 49742 47802 32.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 1.97 71.7 0.4 2.1 2.1 1187
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QAG 2 30 46097 42818 2286 97.88 0.1532 0.15314 0.15103 0.1497 0.19422 RANDOM 39.942
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.18 2.47 -2.62 2.54
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 18.638 r_scangle_it 7.227 r_dihedral_angle_1_deg 6.537 r_sphericity_bonded 6.17 r_scbond_it 4.749 r_mcangle_it 3.441 r_rigid_bond_restr 2.354 r_mcbond_it 2.156 r_angle_refined_deg 2.02 r_angle_other_deg 1.049
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 18.638 r_scangle_it 7.227 r_dihedral_angle_1_deg 6.537 r_sphericity_bonded 6.17 r_scbond_it 4.749 r_mcangle_it 3.441 r_rigid_bond_restr 2.354 r_mcbond_it 2.156 r_angle_refined_deg 2.02 r_angle_other_deg 1.049 r_symmetry_vdw_other 0.382 r_nbd_other 0.249 r_nbd_refined 0.239 r_chiral_restr 0.223 r_symmetry_vdw_refined 0.21 r_symmetry_hbond_refined 0.21 r_xyhbond_nbd_refined 0.179 r_nbtor_other 0.098 r_bond_refined_d 0.027 r_gen_planes_other 0.014 r_gen_planes_refined 0.011 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7688 Nucleic Acid Atoms Solvent Atoms 564 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement