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X-ray crystal structure of putative HTH transcription regulator from Archaeoglobus fulgidus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 294 PEG 8000, Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.38 48.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.265 α = 90 b = 59.634 β = 90.11 c = 63.498 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 2004-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97926 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 40 98 0.104 39 16.1 34891 34193
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.59 94.8 0.628 2.89 2185
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.55 40 34155 32445 1710 97.89 0.15014 0.14846 0.1634 0.18286 0.1925 RANDOM 12.339
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 -0.1 0.41 -0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.303 r_scangle_it 3.443 r_scbond_it 2.006 r_sphericity_free 1.705 r_mcangle_it 1.328 r_angle_refined_deg 1.144 r_sphericity_bonded 1.131 r_rigid_bond_restr 1.063 r_angle_other_deg 0.907 r_mcbond_it 0.728
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.303 r_scangle_it 3.443 r_scbond_it 2.006 r_sphericity_free 1.705 r_mcangle_it 1.328 r_angle_refined_deg 1.144 r_sphericity_bonded 1.131 r_rigid_bond_restr 1.063 r_angle_other_deg 0.907 r_mcbond_it 0.728 r_symmetry_vdw_other 0.302 r_nbd_other 0.233 r_nbd_refined 0.217 r_symmetry_vdw_refined 0.216 r_symmetry_hbond_refined 0.171 r_xyhbond_nbd_refined 0.164 r_chiral_restr 0.081 r_nbtor_other 0.078 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1734 Nucleic Acid Atoms Solvent Atoms 397 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHELXD phasing SOLVE phasing