1SEG

Crystal structure of a toxin chimera between Lqh-alpha-IT from the scorpion Leiurus quinquestriatus hebraeus and AAH2 from Androctonus australis hector


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.6296100mM trisodium citrate dihydrate, 1M mono-ammonium dihydrogen phosphate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties
Matthews coefficientSolvent content
2.6452.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 74.523α = 90
b = 74.523β = 90
c = 56.973γ = 90
Symmetry
Space GroupI 4 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42002-12-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-41.003ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.352.797.60.0410.04125.91219554-314.115
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.3588.70.2520.0515.11219647

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUTPDB ENTRY 1AHO1.352.718549100297.570.154720.154720.153490.17802RANDOM14.787
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.96-1.963.91
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.483
r_scangle_it4.763
r_scbond_it3.348
r_mcangle_it2.176
r_angle_refined_deg1.686
r_mcbond_it1.574
r_angle_other_deg0.844
r_symmetry_hbond_refined0.253
r_nbd_other0.249
r_nbd_refined0.22
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.483
r_scangle_it4.763
r_scbond_it3.348
r_mcangle_it2.176
r_angle_refined_deg1.686
r_mcbond_it1.574
r_angle_other_deg0.844
r_symmetry_hbond_refined0.253
r_nbd_other0.249
r_nbd_refined0.22
r_xyhbond_nbd_refined0.196
r_symmetry_vdw_other0.157
r_chiral_restr0.109
r_nbtor_other0.082
r_symmetry_vdw_refined0.061
r_bond_refined_d0.016
r_gen_planes_refined0.009
r_gen_planes_other0.004
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms518
Nucleic Acid Atoms
Solvent Atoms119
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing