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Structure of single-stranded DNA-binding protein (SSB) from D. radiodurans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 298 PEG 200, PEG 4000, Sodium Acetate, Potassium Chloride, TCEP, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.3 46.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.347 α = 90 b = 63.476 β = 106.27 c = 54.907 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESEARCH 2003-10-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.9795, 0.9568 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 99.9 0.061 7.6 28039 28011
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.89 99.9 0.418 5.1 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 19.8 27637 1380 98.67 0.233 0.21789 0.21714 0.232 0.2553 RANDOM 21.498
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 0.26 -0.38 0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.908 r_scangle_it 4.119 r_scbond_it 2.775 r_mcangle_it 1.561 r_angle_refined_deg 0.976 r_mcbond_it 0.79 r_symmetry_vdw_refined 0.304 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.16 r_symmetry_hbond_refined 0.113
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.908 r_scangle_it 4.119 r_scbond_it 2.775 r_mcangle_it 1.561 r_angle_refined_deg 0.976 r_mcbond_it 0.79 r_symmetry_vdw_refined 0.304 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.16 r_symmetry_hbond_refined 0.113 r_chiral_restr 0.07 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1682 Nucleic Acid Atoms Solvent Atoms 186 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SOLVE phasing