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High resolution Structure determination of rhodocetin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 294 NaH2PO4, KH2PO4, HEPES-Na, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.89 57.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.875 α = 90 b = 65.935 β = 90 c = 118.841 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirror 2001-05-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C 0.978569 NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 28.87 97.2 28995 27466
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 78.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 28.87 28995 27466 1472 97.16 0.19128 0.19128 0.18918 0.2242 0.23139 RANDOM 24.568
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.02 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.156 r_scangle_it 4.832 r_scbond_it 3.127 r_mcangle_it 2.18 r_angle_refined_deg 1.672 r_mcbond_it 1.183 r_angle_other_deg 0.998 r_symmetry_vdw_other 0.274 r_nbd_other 0.257 r_symmetry_vdw_refined 0.245
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.156 r_scangle_it 4.832 r_scbond_it 3.127 r_mcangle_it 2.18 r_angle_refined_deg 1.672 r_mcbond_it 1.183 r_angle_other_deg 0.998 r_symmetry_vdw_other 0.274 r_nbd_other 0.257 r_symmetry_vdw_refined 0.245 r_nbd_refined 0.236 r_chiral_restr 0.175 r_xyhbond_nbd_refined 0.167 r_symmetry_hbond_refined 0.107 r_nbtor_other 0.089 r_bond_refined_d 0.02 r_gen_planes_other 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2104 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement