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Atomic structure of a putative anaerobic dehydrogenase component
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 PEG 300, ammonium sulfate, imidazole, glycerol, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.78 55.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.401 α = 90 b = 79.355 β = 115.14 c = 43.47 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 2003-12-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97945, 0.97929 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 96.5 0.04 4 85983
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 32.5 0.29 1.56 7337
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.38 20 45922 2481 89.96 0.16253 0.16133 0.1688 0.18527 0.1922 RANDOM 12.365
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.74 0.19 -0.35 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.591 r_scangle_it 3.777 r_scbond_it 2.375 r_mcangle_it 1.584 r_angle_refined_deg 1.396 r_angle_other_deg 1.23 r_mcbond_it 0.856 r_symmetry_vdw_other 0.293 r_nbd_refined 0.258 r_nbd_other 0.243
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.591 r_scangle_it 3.777 r_scbond_it 2.375 r_mcangle_it 1.584 r_angle_refined_deg 1.396 r_angle_other_deg 1.23 r_mcbond_it 0.856 r_symmetry_vdw_other 0.293 r_nbd_refined 0.258 r_nbd_other 0.243 r_symmetry_hbond_refined 0.241 r_xyhbond_nbd_refined 0.219 r_chiral_restr 0.117 r_symmetry_vdw_refined 0.089 r_nbtor_other 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1633 Nucleic Acid Atoms Solvent Atoms 264 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing