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Crystal Structure of 4-Chlorocatechol 1,2-dioxygenase from Rhodococcus opacus 1CP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 ammonium sulphate, sodium chloride, tris, glycerol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.11 60.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.328 α = 90 b = 89.328 β = 90 c = 313.395 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirrors 2002-10-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.00067 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.47 158.1 92.23 0.098 13.2 4.4 26170 63.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.47 2.54 99.7 0.679 2.8 1321
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.47 158.1 24226 24226 1288 92.23 0.21612 0.21612 0.21217 0.214 0.28963 RANDOM 57.293
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.33 -1.16 -2.33 3.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.578 r_scangle_it 2.345 r_scbond_it 1.35 r_angle_refined_deg 1.298 r_mcangle_it 1.052 r_mcbond_it 0.557 r_nbd_refined 0.221 r_symmetry_vdw_refined 0.201 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.578 r_scangle_it 2.345 r_scbond_it 1.35 r_angle_refined_deg 1.298 r_mcangle_it 1.052 r_mcbond_it 0.557 r_nbd_refined 0.221 r_symmetry_vdw_refined 0.201 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.17 r_metal_ion_refined 0.13 r_chiral_restr 0.098 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4041 Nucleic Acid Atoms Solvent Atoms 284 Heterogen Atoms 106
Software Software Software Name Purpose REFMAC refinement MAR345 data collection SCALEPACK data scaling SOLVE phasing