☰ Navigation Tabs
Crystal structure of Rv1626 from Mycobacterium tuberculosis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SD5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 4 295 PEG 1.5K, pure water, pH 4, Micro batch, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2 38.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.836 α = 90 b = 44.836 β = 90 c = 180.626 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.813 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.482 45 0.037 21.7 6.2 29935 22.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1sd5 1.482 30 30649 29676 1570 98.28 0.2042 0.2042 0.2029 0.2443 0.22835 0.2619 RANDOM 16.467
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.31 -0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 14.204 r_scangle_it 5.95 r_scbond_it 3.905 r_mcangle_it 2.692 r_mcbond_it 1.708 r_angle_refined_deg 1.093 r_angle_other_deg 0.659 r_symmetry_vdw_other 0.356 r_symmetry_vdw_refined 0.3 r_nbd_other 0.266
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 14.204 r_scangle_it 5.95 r_scbond_it 3.905 r_mcangle_it 2.692 r_mcbond_it 1.708 r_angle_refined_deg 1.093 r_angle_other_deg 0.659 r_symmetry_vdw_other 0.356 r_symmetry_vdw_refined 0.3 r_nbd_other 0.266 r_nbd_refined 0.246 r_symmetry_hbond_refined 0.185 r_xyhbond_nbd_refined 0.137 r_nbtor_other 0.085 r_chiral_restr 0.084 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1481 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement DENZO data reduction CCP4 data scaling MOLREP phasing