1S88
NMR structure of a DNA duplex with two INA nucleotides inserted opposite each other, dCTCAACXCAAGCT:dAGCTTGXGTTGAG
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.9mM DNA, 10mM sodium phosphate buffer, 100mM NaCl, 0.05mM EDTA | 100% D2O | 100 mM | 7.0 | 1 atm | 298 | |
2 | 2D TOCSY | 1.9mM DNA, 10mM sodium phosphate buffer, 100mM NaCl, 0.05mM EDTA | 100% D2O | 100 mM | 7.0 | 1 atm | 298 | |
3 | DQF-COSY | 1.9mM DNA, 10mM sodium phosphate buffer, 100mM NaCl, 0.05mM EDTA | 100% D2O | 100 mM | 7.0 | 1 atm | 298 | |
4 | 2D NOESY | 1.9mM DNA, 10mM sodium phosphate buffer, 100mM NaCl, 0.05mM EDTA | 90% H2O 10% D20 | 100 mM | 7.0 | 1 atm | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
restraint molecular dynamics | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 40 |
Conformers Submitted Total Number | 20 |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | iterative matrix relaxation | Amber | 6 | Case |
2 | processing | Felix | 98 | MSI, San Diego, CA |