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Structure of Serine Acetyltransferase from Haemophilis influenzae Rd
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 2M NaCl, 0.16M MgCl2, 3% PEG 400, and 0.1 M NaCitrate pH 5.6 , VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3 58.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.963 α = 90 b = 209.67 β = 90 c = 136.569 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-11-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9793 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 20 0.102 18.6 51228 51228 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.8 100 0.331 6.98
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.7 20 46107 48592 2601 99.75 0.17401 0.17155 0.21913 0.1885 RANDOM 31.021
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 2.27 -2.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.885 r_dihedral_angle_3_deg 18.948 r_dihedral_angle_4_deg 17.601 r_dihedral_angle_1_deg 6.989 r_scangle_it 2.466 r_scbond_it 1.603 r_angle_refined_deg 1.347 r_mcangle_it 1.017 r_angle_other_deg 0.821 r_mcbond_it 0.806
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.885 r_dihedral_angle_3_deg 18.948 r_dihedral_angle_4_deg 17.601 r_dihedral_angle_1_deg 6.989 r_scangle_it 2.466 r_scbond_it 1.603 r_angle_refined_deg 1.347 r_mcangle_it 1.017 r_angle_other_deg 0.821 r_mcbond_it 0.806 r_symmetry_vdw_other 0.246 r_symmetry_hbond_refined 0.225 r_nbd_refined 0.208 r_nbd_other 0.188 r_symmetry_vdw_refined 0.183 r_xyhbond_nbd_refined 0.174 r_xyhbond_nbd_other 0.142 r_mcbond_other 0.106 r_nbtor_other 0.09 r_chiral_restr 0.077 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbtor_refined r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11094 Nucleic Acid Atoms Solvent Atoms 418 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing