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Human protein farnesyltransferase complexed with L-778,123 and FPP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JCQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.7 290 14% PEG 8000, 400 mM ammonium acetate pH 5.7, 20 mM DTT
, VAPOR DIFFUSION, HANGING DROP, temperature 290K, pH 5.70
Crystal Properties Matthews coefficient Solvent content 3.16 61.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 178.247 α = 90 b = 178.247 β = 90 c = 64.518 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 TOROIDAL MIRROR 1999-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12B NSLS X12B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 96.3 0.055 31.1 88408 88408 12.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 76 0.127 10.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1JCQ 1.9 36.67 88408 87651 4410 94.9 0.161 0.161 0.1613 0.184 0.1845 RANDOM 20.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 0.89 0.24 -0.48
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 20.7 c_scangle_it 4.07 c_scbond_it 2.56 c_mcangle_it 1.99 c_improper_angle_d 1.32 c_angle_deg 1.3 c_mcbond_it 1.24 c_bond_d 0.009 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 20.7 c_scangle_it 4.07 c_scbond_it 2.56 c_mcangle_it 1.99 c_improper_angle_d 1.32 c_angle_deg 1.3 c_mcbond_it 1.24 c_bond_d 0.009 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5911 Nucleic Acid Atoms Solvent Atoms 557 Heterogen Atoms 77
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling CNS phasing X-PLOR refinement