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Crystal structure of a SOD-like protein from Bacillus subtilis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 298 TRIS, Ammonium sulphate, PEG4000, LiCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.95 37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.225 α = 84.35 b = 61.108 β = 76.02 c = 64.915 γ = 90.42
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.281 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 37.07 94.6 0.034 0.034 13.8 4.7 49677 49677 29.17
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 92.4 0.23 0.23 2.6 2.2 3958
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 37.01 45524 45524 4150 100 0.22399 0.22399 0.22091 0.2503 0.25762 0.2747 RANDOM 39.868
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -1.25 2.52 -1.98 -1.48 1.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 17.076 r_sphericity_free 14.179 r_scangle_it 5.571 r_scbond_it 3.771 r_angle_refined_deg 2.775 r_mcangle_it 2.584 r_mcbond_it 1.575 r_symmetry_vdw_refined 0.298 r_nbd_refined 0.286 r_chiral_restr 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 17.076 r_sphericity_free 14.179 r_scangle_it 5.571 r_scbond_it 3.771 r_angle_refined_deg 2.775 r_mcangle_it 2.584 r_mcbond_it 1.575 r_symmetry_vdw_refined 0.298 r_nbd_refined 0.286 r_chiral_restr 0.22 r_xyhbond_nbd_refined 0.209 r_metal_ion_refined 0.182 r_symmetry_hbond_refined 0.157 r_bond_refined_d 0.026 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4520 Nucleic Acid Atoms Solvent Atoms 390 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHARP phasing