☰ Navigation Tabs
YHCH PROTEIN (HI0227) COPPER COMPLEX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JOP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 25% PEG 4000, 1 M Sodium Acetate, 0.1 M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.3 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.9 α = 90 b = 153.9 β = 112.9 c = 53.8 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH mirror 2000-07-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.3766, 1.3804, 1.1000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 93 0.055 29.8 7.2 29577 29577 -3 35.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.24 64.4 0.09 6.2 2.3 1033
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1JOP 2.2 15 29480 29480 1475 93 0.18 0.18 0.176 0.1779 0.246 0.2418 RANDOM 5% 51.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.68 -1.04 -0.88 -4.61
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 14.526 r_scbond_it 12.819 r_mcangle_it 8.151 r_dihedral_angle_1_deg 7.321 r_mcbond_it 4.418 r_angle_refined_deg 1.865 r_nbd_refined 0.272 r_symmetry_vdw_refined 0.245 r_symmetry_hbond_refined 0.199 r_xyhbond_nbd_refined 0.186
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 14.526 r_scbond_it 12.819 r_mcangle_it 8.151 r_dihedral_angle_1_deg 7.321 r_mcbond_it 4.418 r_angle_refined_deg 1.865 r_nbd_refined 0.272 r_symmetry_vdw_refined 0.245 r_symmetry_hbond_refined 0.199 r_xyhbond_nbd_refined 0.186 r_chiral_restr 0.127 r_metal_ion_refined 0.076 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4758 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms 8
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing REFMAC refinement