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Crystal structures of a novel open pore ferritin from the hyperthermophilic Archaeon Archaeoglobus fulgidus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 microbatch under oil 7.5 293 PEG 400, HEPES, MgCl2, pH 7.5, microbatch under oil, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.39 63.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 183.437 α = 90 b = 187.831 β = 90 c = 178.089 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2003-03-27 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9720, 0.9800, 0.9797 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 90 97.7 0.069 0.069 13.32 174236 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 99.6 0.242 5.16
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 15.01 164841 8714 98.39 0.18055 0.17858 0.2754 0.21771 0.2969 RANDOM 25.332
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.11 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.069 r_scangle_it 4.865 r_mcangle_it 3.322 r_scbond_it 3.274 r_mcbond_it 2.273 r_angle_refined_deg 1.571 r_angle_other_deg 0.857 r_symmetry_hbond_refined 0.415 r_symmetry_vdw_refined 0.313 r_nbd_other 0.273
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.069 r_scangle_it 4.865 r_mcangle_it 3.322 r_scbond_it 3.274 r_mcbond_it 2.273 r_angle_refined_deg 1.571 r_angle_other_deg 0.857 r_symmetry_hbond_refined 0.415 r_symmetry_vdw_refined 0.313 r_nbd_other 0.273 r_nbd_refined 0.239 r_symmetry_vdw_other 0.214 r_xyhbond_nbd_refined 0.201 r_chiral_restr 0.143 r_nbtor_other 0.095 r_metal_ion_refined 0.079 r_bond_refined_d 0.017 r_gen_planes_refined 0.015 r_gen_planes_other 0.007 r_bond_other_d r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16133 Nucleic Acid Atoms Solvent Atoms 866 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MLPHARE phasing