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Crystal Structure of AvrPphF ORF2, A Type III Effector from P. syringae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 PEG8000, Bis-Tris, Magnesium Acetate and glycerol, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K 2 VAPOR DIFFUSION, SITTING DROP 7.5 291 Ammonium Sulfate, PEG400, HEPES and glycerol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.689 α = 90 b = 68.334 β = 90 c = 88.365 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ Osmic Confocal "Blue" Optics 2002-08-28 M SINGLE WAVELENGTH 2 1 100 IMAGE PLATE RIGAKU RAXIS IV++ Osmic Confocal "Blue" Optics 2002-08-26
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.8 0.054 18.9 8.2 16474 16442 -3 18.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 99.1 0.233 6.1 1601
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2 19.63 16462 16408 798 99.7 0.226 0.225 0.225 0.2252 0.241 0.2393 RANDOM 33.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.36 -2.49 -6.87
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.9 c_scangle_it 2.14 c_mcangle_it 1.79 c_scbond_it 1.39 c_angle_deg 1.3 c_mcbond_it 1.03 c_improper_angle_d 0.81 c_bond_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1267 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms
Software Software Software Name Purpose CNS refinement SCALEPACK data scaling SHELXD phasing