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TSG101(UEV) domain in complex with Ubiquitin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KPP 1KPP & 1UBO experimental model PDB 1UBO 1KPP & 1UBO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 298 1.4M Ammonium sulfate, 0.1M sodium acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.91 57.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.634 α = 90 b = 59.154 β = 128.67 c = 93.998 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-01-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.97979 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 72.55 97.8 41841 40921 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 96.2 0.335 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD & Molecular replacement THROUGHOUT 1KPP & 1UBO 2 72.55 41841 40921 2025 97.8 0.1906 0.20319 0.20123 0.2066 0.23998 0.2454 RANDOM 27.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.8 -1.48 -1.21 1.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.579 r_scangle_it 3.48 r_scbond_it 2.201 r_mcangle_it 1.422 r_angle_refined_deg 1.357 r_angle_other_deg 0.8 r_mcbond_it 0.739 r_nbd_other 0.235 r_symmetry_hbond_refined 0.22 r_xyhbond_nbd_refined 0.215
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.579 r_scangle_it 3.48 r_scbond_it 2.201 r_mcangle_it 1.422 r_angle_refined_deg 1.357 r_angle_other_deg 0.8 r_mcbond_it 0.739 r_nbd_other 0.235 r_symmetry_hbond_refined 0.22 r_xyhbond_nbd_refined 0.215 r_symmetry_vdw_other 0.211 r_symmetry_vdw_refined 0.193 r_nbd_refined 0.19 r_chiral_restr 0.085 r_nbtor_other 0.084 r_metal_ion_refined 0.037 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3439 Nucleic Acid Atoms Solvent Atoms 350 Heterogen Atoms 32
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement