☰ Navigation Tabs
Structure and protein design of human apyrase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 295 PEG MME 2000, sodium acetate, ammonium sulfate, strontium chloride, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 295.0K
Crystal Properties Matthews coefficient Solvent content 2.29 45.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.163 α = 99.44 b = 52.501 β = 106.58 c = 77.925 γ = 99.89
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-10-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 0.98, 0.9794, 0.9790, 0.9687 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 72.6 95.1 0.057 14.3 3.5 65632 16.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 79.2 0.238 3.5 2.3 5489
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 72.55 65632 62309 3323 95.11 0.1591 0.1591 0.15736 0.1578 0.19087 0.1917 RANDOM 19.001
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.33 -0.05 0.09 -0.24 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.464 r_scangle_it 4.872 r_scbond_it 2.946 r_mcangle_it 1.902 r_angle_refined_deg 1.532 r_mcbond_it 1.045 r_nbd_refined 0.206 r_symmetry_hbond_refined 0.184 r_symmetry_vdw_refined 0.172 r_xyhbond_nbd_refined 0.153
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.464 r_scangle_it 4.872 r_scbond_it 2.946 r_mcangle_it 1.902 r_angle_refined_deg 1.532 r_mcbond_it 1.045 r_nbd_refined 0.206 r_symmetry_hbond_refined 0.184 r_symmetry_vdw_refined 0.172 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.118 r_bond_refined_d 0.016 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4998 Nucleic Acid Atoms Solvent Atoms 525 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing